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AT5G19730 Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832093, updated on 15-Oct-2023

Summary

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Gene symbol
AT5G19730
Gene description
Pectin lyase-like superfamily protein
Primary source
Araport:AT5G19730
Locus tag
AT5G19730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T29J13.150; T29J13_150
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (6670275..6673625)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Peptidase M28 family protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene Mitochondrial substrate carrier family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Guard Cell-Specific Pectin METHYLESTERASE53 Is Required for Abscisic Acid-Mediated Stomatal Function and Heat Response in Arabidopsis. Wu HC, et al. Front Plant Sci, 2022. PMID 35265095, Free PMC Article
  2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

NM_121978.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables pectinesterase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
  
involved_in cotyledon vascular tissue pattern formation IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to heat IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm HDA PubMed 
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
Pectin lyase-like superfamily protein
NP_197474.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6670275..6673625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_121978.4 → NP_197474.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197474.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VYZ3
    UniProtKB/TrEMBL
    A0A178UI76
    Conserved Domains (2) summary
    PLN02432
    Location:90 → 382
    PLN02432; putative pectinesterase
    PLN02682
    Location:22 → 383
    PLN02682; pectinesterase family protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VYZ3.1

Gene LinkOut

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