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AT5G19900 PRLI-interacting factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 832112, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G19900
Gene description
PRLI-interacting factor
Primary source
Araport:AT5G19900
Locus tag
AT5G19900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28I16.50; F28I16_50
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Genomic context

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See AT5G19900 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (6727342..6730407, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene SOH1 family protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001343627.1
NM_001343629.1
NM_001343630.1
NM_121997.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PRLI-interacting factor
NP_001318605.1
  • PRLI-interacting factor, putative; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    6727342..6730407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001343628.1 → NP_001331939.1  PRLI-interacting factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
    Conserved Domains (2) summary
    TIGR01628
    Location:14 → 162
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam04554
    Location:10 → 67
    Extensin_2; Extensin-like region

  2. NM_001343627.1 → NP_001318605.1  PRLI-interacting factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
    Conserved Domains (2) summary
    TIGR01628
    Location:14 → 162
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam04554
    Location:10 → 67
    Extensin_2; Extensin-like region

  3. NM_121997.3 → NP_197490.1  PRLI-interacting factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_197490.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
    Conserved Domains (2) summary
    TIGR01628
    Location:14 → 162
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam04554
    Location:10 → 67
    Extensin_2; Extensin-like region

  4. NM_001343629.1 → NP_001331938.1  PRLI-interacting factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
    Conserved Domains (2) summary
    TIGR01628
    Location:14 → 162
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam04554
    Location:10 → 67
    Extensin_2; Extensin-like region

  5. NM_001343630.1 → NP_001331937.1  PRLI-interacting factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMZ3, A0A384LM88, A0A7G2FBU9, B9DF92
    Conserved Domains (2) summary
    TIGR01628
    Location:14 → 162
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam04554
    Location:10 → 67
    Extensin_2; Extensin-like region
Nucleotide Protein
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