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CLPS5 CLP1-similar protein 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 833990, updated on 15-Oct-2023

Summary

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Gene symbol
CLPS5
Gene description
CLP1-similar protein 5
Primary source
Araport:AT5G39930
Locus tag
AT5G39930
See related
TAIR:AT5G39930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLP1-similar protein 5; MYH19.90; MYH19_90
Summary
Encodes a protein with similarity to the CLP1 polyadenylation factor.
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Genomic context

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See CLPS5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (15985025..15987339, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene pre-mRNA cleavage complex II protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene thioredoxin 2 Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. Hunt AG, et al. BMC Genomics, 2008 May 14. PMID 18479511, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_123356.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polynucleotide 5'-hydroxyl-kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLP1-similar protein 5
NP_198809.2
  • CLP1-similar protein 5 (CLPS5); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 693 Blast hits to 689 proteins in 274 species: Archae - 99; Bacteria - 14; Metazoa - 196; Fungi - 200; Plants - 63; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    15985025..15987339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_123356.3 → NP_198809.2  CLP1-similar protein 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_198809.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FLE2
    UniProtKB/TrEMBL
    A0A654G6J3, A0A7G2FFF6
    Conserved Domains (2) summary
    COG5623
    Location:6 → 421
    CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
    pfam16575
    Location:121 → 310
    CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FLE2.1

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