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AT5G49560 Putative methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835018, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G49560
Gene description
Putative methyltransferase family protein
Primary source
Araport:AT5G49560
Locus tag
AT5G49560
See related
TAIR:AT5G49560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K6M13.11; K6M13_11
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Genomic context

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See AT5G49560 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (20110832..20111806, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene biogenesis of lysosome organelles complex 1 subunit-like protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene peptide-N-glycanase 1 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124334.2

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Putative methyltransferase family protein
NP_199767.1
  • Putative methyltransferase family protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: Putative methyltransferase family protein (TAIR:AT3G50850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20110832..20111806 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124334.2 → NP_199767.1  Putative methyltransferase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199767.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UMA5, A0A5S9YES8, Q9FGZ0
    Conserved Domains (1) summary
    cl17173
    Location:54 → 235
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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