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AT5G57060 60S ribosomal L18a-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835810, updated on 15-Feb-2024

Summary

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Gene symbol
AT5G57060
Gene description
60S ribosomal L18a-like protein
Primary source
Araport:AT5G57060
Locus tag
AT5G57060
See related
TAIR:AT5G57060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MHM17.20; MHM17_20
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Genomic context

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See AT5G57060 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (23089909..23092224)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene Protein phosphatase 2C family protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714
  2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001345231.1
NM_001345232.1
NM_001345233.1
NM_001345234.1
NM_001345235.1
NM_001345236.1
NM_001345237.1
NM_125088.3
NM_203217.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
60S ribosomal L18a-like protein
NP_001318817.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974946.1
  • BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23089909..23092224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345231.1 → NP_001318817.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q7X6A8

  2. NM_001345233.1 → NP_001330164.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q7X6A8

  3. NM_001345232.1 → NP_001330168.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q9LTR7

  4. NM_203217.2 → NP_974946.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974946.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, A0A5S9YET2, F4KAI3

  5. NM_125088.3 → NP_568847.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568847.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q7X6A8

  6. NM_001345235.1 → NP_001330169.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q7X6A8

  7. NM_001345234.1 → NP_001330167.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q9LTR7

  8. NM_001345236.1 → NP_001330165.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, A0A5S9YET2, F4KAI3

  9. NM_001345237.1 → NP_001330166.1  60S ribosomal L18a-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8Q2, Q7X6A8
Nucleotide Protein
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