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AT1G08710 F-box family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837392, updated on 6-Oct-2023

Summary

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Gene symbol
AT1G08710
Gene description
F-box family protein
Primary source
Araport:AT1G08710
Locus tag
AT1G08710
See related
TAIR:AT1G08710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F22O13.19; F22O13_19
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Genomic context

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See AT1G08710 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (2771620..2773531)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARF GAP-like zinc finger-containing protein ZIGA4 Neighboring gene SCR-like 3 Neighboring gene Presenilin-1 Neighboring gene Protein kinase superfamily protein Neighboring gene Myosin family protein with Dil domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis F-box protein At1g08710 interacts with transcriptional protein ADA2b and imparts drought stress tolerance by negatively regulating seedling growth. Rao V, et al. Biochem Biophys Res Commun, 2021 Jan 15. PMID 33360542
  2. Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis. Risseeuw EP, et al. Plant J, 2003 Jun. PMID 12795696
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis F-box protein At1g08710 interacts with transcriptional protein ADA2b and imparts drought stress tolerance by negatively regulating seedling growth.
    Title: Arabidopsis F-box protein At1g08710 interacts with transcriptional protein ADA2b and imparts drought stress tolerance by negatively regulating seedling growth.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084024.2
NM_100744.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
F-box family protein
NP_001077493.1
  • F-box family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 110 Blast hits to 110 proteins in 39 species: Archae - 0; Bacteria - 4; Metazoa - 49; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
NP_172347.2
  • F-box family protein; Has 132 Blast hits to 132 proteins in 42 species: Archae - 3; Bacteria - 4; Metazoa - 68; Fungi - 2; Plants - 38; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2771620..2773531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084024.2 → NP_001077493.1  F-box family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077493.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8VZ41, Q9CAZ0
    UniProtKB/TrEMBL
    A0A178WEX7, A0A5S9TDQ8
    Conserved Domains (2) summary
    COG4942
    Location:85 → 204
    EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
    pfam12937
    Location:4 → 49
    F-box-like

  2. NM_100744.3 → NP_172347.2  F-box family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172347.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WE03, A0A654E906
    Conserved Domains (1) summary
    pfam12937
    Location:4 → 49
    F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9CAZ0.2

Gene LinkOut

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