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DUF2 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837684, updated on 7-Sep-2023

Summary

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Gene symbol
DUF2
Gene description
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2)
Primary source
Araport:AT1G11420
Locus tag
AT1G11420
See related
TAIR:AT1G11420
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATDUF2; DOMAIN OF UNKNOWN FUNCTION 724 2; T23J18.9; T23J18_9
Summary
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins.
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Genomic context

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See DUF2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (3844461..3846956, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene PLAC8 family protein Neighboring gene Protein kinase superfamily protein Neighboring gene partner of Y14-MAGO Neighboring gene ncRNA Neighboring gene S-locus lectin protein kinase family protein Neighboring gene plastid developmental protein DAG Neighboring gene uncharacterized protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtDuf2 was detected in trichomes and the cells at the base of trichomes.
    Title: Characterization of DUF724 gene family in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_101015.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2)
NP_172609.1
  • DOMAIN OF UNKNOWN FUNCTION 724 2 (DUF2); FUNCTIONS IN: RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 603 Blast hits to 525 proteins in 93 species: Archae - 19; Bacteria - 36; Metazoa - 149; Fungi - 17; Plants - 302; Viruses - 1; Other Eukaryotes - 79 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3844461..3846956 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101015.2 → NP_172609.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172609.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I8W1, Q9LPZ2
    UniProtKB/TrEMBL
    A0A178W4H8, A0A654E8Z8, A0A7G2DUP7
    Conserved Domains (3) summary
    smart00743
    Location:150 → 211
    Agenet; Tudor-like domain present in plant sequences
    pfam05266
    Location:405 → 603
    DUF724; Protein of unknown function (DUF724)
    pfam05641
    Location:10 → 72
    Agenet; Agenet domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4I8W1.1

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