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UBC1 ubiquitin carrier protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838002, updated on 15-Oct-2023

Summary

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Gene symbol
UBC1
Gene description
ubiquitin carrier protein 1
Primary source
Araport:AT1G14400
Locus tag
AT1G14400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATUBC1; F14L17.17; F14L17_17; ubiquitin carrier protein 1; UBIQUITIN CARRIER PROTEIN 1; UBIQUITIN CONJUGATING ENZYME 1
Summary
ubiquitin carrier protein
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Genomic context

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Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (4926486..4928812, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene protein kinase 2A Neighboring gene IQ-domain 28 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene ssDNA-binding transcriptional regulator Neighboring gene Pectate lyase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. E2 conjugases UBC1 and UBC2 regulate MYB42-mediated SOS pathway in response to salt stress in Arabidopsis. Sun Y, et al. New Phytol, 2020 Jul. PMID 32167578
  2. Repression of the floral transition via histone H2B monoubiquitination. Gu X, et al. Plant J, 2009 Feb. PMID 18980658
  3. The E2 ubiquitin-conjugating enzymes, AtUBC1 and AtUBC2, play redundant roles and are involved in activation of FLC expression and repression of flowering in Arabidopsis thaliana. Xu L, et al. Plant J, 2009 Jan. PMID 18798874
  4. Effect of Arabidopsis COP10 ubiquitin E2 enhancement activity across E2 families and functional conservation among its canonical homologues. Lau OS, et al. Biochem J, 2009 Mar 15. PMID 19061479
  5. Histone H2B monoubiquitination in the chromatin of FLOWERING LOCUS C regulates flowering time in Arabidopsis. Cao Y, et al. Plant Cell, 2008 Oct. PMID 18849490, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. E2 conjugases UBC1 and UBC2 regulate MYB42-mediated SOS pathway in response to salt stress in Arabidopsis.
    Title: E2 conjugases UBC1 and UBC2 regulate MYB42-mediated SOS pathway in response to salt stress in Arabidopsis.
  2. UBC1 and UBC2 redundantly mediate H2B monoubiquitination, and upregulate the expression of FLC.
    Title: Repression of the floral transition via histone H2B monoubiquitination.
  3. The double mutant Atubc1-1 Atubc2-1 shows a dramatically enhanced mutant phenotype. These two genes act together with HUB1/HUB2 in H2B ubiquitylation, which is involved in the activation of floral repressor genes.
    Title: The E2 ubiquitin-conjugating enzymes, AtUBC1 and AtUBC2, play redundant roles and are involved in activation of FLC expression and repression of flowering in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101307.5
NM_202096.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone H2B deubiquitinase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf morphogenesis IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within negative regulation of flower development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin carrier protein 1
NP_563951.1
  • ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink).
NP_973825.1
  • ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4926486..4928812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101307.5 → NP_563951.1  ubiquitin carrier protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563951.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P25865, Q4TZ08
    UniProtKB/TrEMBL
    A0A178WMI7, A0A5S9UFE9
    Conserved Domains (1) summary
    pfam00179
    Location:8 → 145
    UQ_con; Ubiquitin-conjugating enzyme

  2. NM_202096.2 → NP_973825.1  ubiquitin carrier protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973825.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P25865, Q4TZ08
    UniProtKB/TrEMBL
    A0A178WMI7, A0A5S9UFE9
    Conserved Domains (1) summary
    pfam00179
    Location:8 → 145
    UQ_con; Ubiquitin-conjugating enzyme
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
2AAK_A.1
P25865.1

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