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PnsB1 NDH-dependent cyclic electron flow 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838168, updated on 15-Oct-2023

Summary

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Gene symbol
PnsB1
Gene description
NDH-dependent cyclic electron flow 1
Primary source
Araport:AT1G15980
Locus tag
AT1G15980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
NAD(P)H DEHYDROGENASE SUBUNIT 48; NDF1; NDH-dependent cyclic electron flow 1; NDH48; Photosynthetic NDH subcomplex B 1; T24D18.8; T24D18_8
Summary
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP.
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (5489145..5491363)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6 Neighboring gene DNA glycosylase superfamily protein Neighboring gene cyclic nucleotide gated channel 7 Neighboring gene GAG1At protein Neighboring gene magnesium transporter 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel nuclear-encoded subunits of the chloroplast NAD(P)H dehydrogenase complex. Sirpiö S, et al. J Biol Chem, 2009 Jan 9. PMID 18974055
  2. Three novel subunits of Arabidopsis chloroplastic NAD(P)H dehydrogenase identified by bioinformatic and reverse genetic approaches. Takabayashi A, et al. Plant J, 2009 Jan. PMID 18785996
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  5. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101466.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within photosynthetic electron transport in photosystem I IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of NAD(P)H dehydrogenase complex (plastoquinone) IDA
Inferred from Direct Assay
more info
 PubMed 
part_of NAD(P)H dehydrogenase complex (plastoquinone) IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
NDH-dependent cyclic electron flow 1
NP_563986.1
  • NDH-dependent cyclic electron flow 1 (NDF1); INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 119 Blast hits to 119 proteins in 57 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5489145..5491363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101466.3 → NP_563986.1  NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563986.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S9N6
    UniProtKB/TrEMBL
    A0A178WIH5, A0A5S9UMY1
    Conserved Domains (1) summary
    cl10013
    Location:130 → 412
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S9N6.1

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