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CNGC7 cyclic nucleotide gated channel 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838169, updated on 7-Sep-2023

Summary

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Gene symbol
CNGC7
Gene description
cyclic nucleotide gated channel 7
Primary source
Araport:AT1G15990
Locus tag
AT1G15990
See related
TAIR:AT1G15990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCNGC7; cyclic nucleotide gated channel 7; T24D18.9; T24D18_9
Summary
Encodes a plasma membrane localized member of the cyclic nucleotide gated channel (CNGC) family that is essential for male reproductive fertility.
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Genomic context

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See CNGC7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (5491133..5494192, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene cinnamoyl coa reductase 1 Neighboring gene NRAMP metal ion transporter 6 Neighboring gene DNA glycosylase superfamily protein Neighboring gene NDH-dependent cyclic electron flow 1 Neighboring gene GAG1At protein Neighboring gene magnesium transporter 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility. Tunc-Ozdemir M, et al. PLoS One, 2013. PMID 23424627, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CNGC7 and 8 are at least partially redundant and provide an essential function at the initiation of pollen tube tip growth
    Title: Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001332197.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within pollen tube growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in pollen tube IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
cyclic nucleotide gated channel 7
NP_001319014.1
  • cyclic nucleotide gated channel 7 (CNGC7); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, flower, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 8 (TAIR:AT1G19780.1); Has 3586 Blast hits to 3408 proteins in 277 species: Archae - 0; Bacteria - 66; Metazoa - 1555; Fungi - 86; Plants - 1001; Viruses - 0; Other Eukaryotes - 878 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5491133..5494192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001332197.1 → NP_001319014.1  cyclic nucleotide gated channel 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4I2R9, Q9S9N5
    UniProtKB/TrEMBL
    A0A5S9UMG7
    Conserved Domains (2) summary
    PLN03192
    Location:149 → 573
    PLN03192; Voltage-dependent potassium channel; Provisional
    cd00038
    Location:502 → 633
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9S9N5.1

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