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RBL10 RHOMBOID-like protein 10 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839113, updated on 28-Nov-2023

Summary

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Gene symbol
RBL10
Gene description
RHOMBOID-like protein 10
Primary source
Araport:AT1G25290
Locus tag
AT1G25290
See related
TAIR:AT1G25290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATRBL10; ATRBL7; AtRBL8; F4F7.32; F4F7_32; RBL8; RHOMBOID-like protein 10; RHOMBOID-like protein 7; RHOMBOID-like protein 8
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Genomic context

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See RBL10 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (8867024..8869289)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tubby like protein 10 Neighboring gene Octicosapeptide/Phox/Bem1p family protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10. Lavell A, et al. Plant J, 2021 Dec. PMID 34582071, Free PMC Article
  2. A predicted plastid rhomboid protease affects phosphatidic acid metabolism in Arabidopsis thaliana. Lavell A, et al. Plant J, 2019 Sep. PMID 31062431, Free PMC Article
  3. An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development. Thompson EP, et al. J Exp Bot, 2012 Jun. PMID 22416142, Free PMC Article
  4. Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana. Knopf RR, et al. Plant J, 2012 Nov. PMID 22738221
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis.
    Title: Arabidopsis ACYL CARRIER PROTEIN4 and RHOMBOID LIKE10 act independently in chloroplast phosphatidate synthesis.
  2. Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10.
    Title: Proteins associated with the Arabidopsis thaliana plastid rhomboid-like protein RBL10.
  3. AtRBL8 and AtRBL9 are localized to chloroplast membranes; AtRBL9 is in the inner envelope membrane, AtRBL8 is in the chloroplast envelope. Knockout of both genes reduces expression of allene oxide synthase.
    Title: Rhomboid proteins in the chloroplast envelope affect the level of allene oxide synthase in Arabidopsis thaliana.
  4. At1g25290 has roles in the chloroplast and in flower development.
    Title: An Arabidopsis rhomboid protease has roles in the chloroplast and in flower development.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_102339.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within galactolipid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within phosphatidic acid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in phosphatidic acid metabolic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast inner membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RHOMBOID-like protein 10
NP_001185093.1
  • RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1).
NP_173900.2
  • RHOMBOID-like protein 10 (RBL10); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 5 (TAIR:AT1G52580.1); Has 5007 Blast hits to 5007 proteins in 1743 species: Archae - 94; Bacteria - 3513; Metazoa - 216; Fungi - 161; Plants - 305; Viruses - 0; Other Eukaryotes - 718 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    8867024..8869289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198164.2 → NP_001185093.1  RHOMBOID-like protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185093.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WL65, A0A5S9VVE5
    Conserved Domains (1) summary
    pfam01694
    Location:161 → 302
    Rhomboid; Rhomboid family

  2. NM_102339.3 → NP_173900.2  RHOMBOID-like protein 10 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173900.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4ICF4, F4ICF5, Q9FRH8
    UniProtKB/TrEMBL
    A0A654ECY6
    Conserved Domains (1) summary
    pfam01694
    Location:161 → 309
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4ICF4.1

Gene LinkOut

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