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AT1G02060 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839279, updated on 15-Feb-2024

Summary

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Gene symbol
AT1G02060
Gene description
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
Araport:AT1G02060
Locus tag
AT1G02060
See related
TAIR:AT1G02060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7I23.14; T7I23_14
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Genomic context

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See AT1G02060 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (360918..363142, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene C2H2-type zinc finger family protein Neighboring gene Chalcone and stilbene synthase family protein Neighboring gene squamosa promoter binding protein-like 8 Neighboring gene uncharacterized protein Neighboring gene zinc ion-binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100086.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_171708.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G37230.1); Has 43508 Blast hits to 14040 proteins in 293 species: Archae - 4; Bacteria - 48; Metazoa - 396; Fungi - 632; Plants - 41173; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    360918..363142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100086.4 → NP_171708.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171708.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O81908
    UniProtKB/TrEMBL
    A0A178W3L0, A0A5S9S4X7
    Conserved Domains (3) summary
    PLN03218
    Location:83 → 470
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:211 → 238
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:466 → 511
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O81908.2

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