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Btbd1 BTB (POZ) domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 83962, updated on 23-Jun-2021

Summary

Official Symbol
Btbd1provided by MGI
Official Full Name
BTB (POZ) domain containing 1provided by MGI
Primary source
MGI:MGI:1933765
See related
Ensembl:ENSMUSG00000025103
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1190005H08Rik
Expression
Ubiquitous expression in testis adult (RPKM 45.4), ovary adult (RPKM 21.6) and 28 other tissues See more
Orthologs
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Genomic context

See Btbd1 in Genome Data Viewer
Location:
7; 7 D3
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (81441822..81479262, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (81792074..81829498, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (88936960..88974317, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 3110040N11 gene Neighboring gene RNA guanine-7 methyltransferase activating subunit Neighboring gene predicted gene, 32695 Neighboring gene predicted gene, 51491 Neighboring gene transmembrane 6 superfamily member 1 Neighboring gene HDGF like 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC37676

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cullin family protein binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within muscle organ development IEA
Inferred from Electronic Annotation
more info
 
involved_in neurogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in P-body IDA
Inferred from Direct Assay
more info
PubMed 
located_in P-body ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic ribonucleoprotein granule ISO
Inferred from Sequence Orthology
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
BTB/POZ domain-containing protein 1
Names
glucose signal-repressing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_146193.2NP_666305.2  BTB/POZ domain-containing protein 1

    See identical proteins and their annotated locations for NP_666305.2

    Status: PROVISIONAL

    Source sequence(s)
    BC072618
    Consensus CDS
    CCDS21407.1
    UniProtKB/Swiss-Prot
    P58544
    Related
    ENSMUSP00000026093.8, ENSMUST00000026093.9
    Conserved Domains (4) summary
    smart00225
    Location:94181
    BTB; Broad-Complex, Tramtrack and Bric a brac
    smart00875
    Location:193292
    BACK; BTB And C-terminal Kelch
    pfam00651
    Location:68177
    BTB; BTB/POZ domain
    pfam08005
    Location:340486
    PHR; PHR domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    81441822..81479262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541322.5XP_006541385.1  BTB/POZ domain-containing protein 1 isoform X1

    Conserved Domains (3) summary
    cd18346
    Location:53185
    BTB_POZ_BTBD1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in BTB/POZ domain-containing protein 1 (BTBD1)
    pfam08005
    Location:340358
    PHR; PHR domain
    cl28903
    Location:181287
    BACK; BACK (BTB and C-terminal Kelch) domain
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