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AT1G52710 Rubredoxin-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 841704, updated on 15-Oct-2023

Summary

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Gene symbol
AT1G52710
Gene description
Rubredoxin-like superfamily protein
Primary source
Araport:AT1G52710
Locus tag
AT1G52710
See related
TAIR:AT1G52710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6D8.4; F6D8_4
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Genomic context

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See AT1G52710 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (19638285..19640512, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001198276.2
NM_104149.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial respiratory chain complex IV IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rubredoxin-like superfamily protein
NP_001185205.1
  • Rubredoxin-like superfamily protein; INVOLVED IN: biological_process unknown.
NP_175680.2
  • Rubredoxin-like superfamily protein; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial envelope; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit Vb (InterPro:IPR002124); BEST Arabidopsis thaliana protein match is: Rubredoxin-like superfamily protein (TAIR:AT3G15640.1); Has 289 Blast hits to 289 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 22; Plants - 78; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    19638285..19640512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198276.2 → NP_001185205.1  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185205.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SSS5

  2. NM_104149.2 → NP_175680.2  Rubredoxin-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_175680.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IEJ9, Q8GW54, Q9SSS5
    UniProtKB/TrEMBL
    A0A5S9WPD0
    Conserved Domains (1) summary
    cl00016
    Location:4 → 90
    Cyt_c_Oxidase_Vb; Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SSS5.2

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