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AT1G57770 FAD/NAD(P)-binding oxidoreductase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 842152, updated on 15-Feb-2024

Summary

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Gene symbol
AT1G57770
Gene description
FAD/NAD(P)-binding oxidoreductase family protein
Primary source
Araport:AT1G57770
Locus tag
AT1G57770
See related
TAIR:AT1G57770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K22.18
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Genomic context

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See AT1G57770 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Sequence:
Chromosome: 1; NC_003070.9 (21395096..21398300)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene uncharacterized protein Neighboring gene ECA1 gametogenesis family protein (DUF784) Neighboring gene ECA1 gametogenesis family protein (DUF784)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chloroplast function revealed through analysis of GreenCut2 genes. Fristedt R. J Exp Bot, 2017 Apr 1. PMID 28369575
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_104572.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carotenoid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
FAD/NAD(P)-binding oxidoreductase family protein
NP_176088.2
  • FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1); Has 6263 Blast hits to 6155 proteins in 967 species: Archae - 159; Bacteria - 2901; Metazoa - 394; Fungi - 76; Plants - 350; Viruses - 0; Other Eukaryotes - 2383 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    21395096..21398300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_104572.4 → NP_176088.2  FAD/NAD(P)-binding oxidoreductase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_176088.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9FVR9, Q9FVS7
    Conserved Domains (2) summary
    COG1233
    Location:50 → 559
    COG1233; Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism]
    cl21454
    Location:54 → 559
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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