Format

Send to:

Choose Destination

abpA actin binding protein A [ Dictyostelium discoideum AX4 ]

Gene ID: 8616670, updated on 22-Aug-2021

Summary

Gene symbol
abpA
Gene description
actin binding protein A
Primary source
dictyBase:DDB_G0268632
Locus tag
DDB_G0268632
Gene type
protein coding
RNA name
alpha actinin
RefSeq status
PROVISIONAL
Organism
Dictyostelium discoideum AX4 (strain: AX4)
Lineage
Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium
Old locus tag
DDBDRAFT_0191133; DDBDRAFT_0216633; DDBDRAFT_0216634; DDB_0191133; DDB_0216633; DDB_0216634
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_007087.3 (2137156..2139957)

Chromosome 1 - NC_007087.3Genomic Context describing neighboring genes Neighboring gene cGMP-specific phosphodiesterase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

General gene information

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 
enables actin filament binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables actin filament binding IDA
Inferred from Direct Assay
more info
PubMed 
enables calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein-macromolecule adaptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables structural constituent of cytoskeleton IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in actin filament IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell cortex IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 
is_active_in cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell leading edge IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cell projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in contractile vacuole IEA
Inferred from Electronic Annotation
more info
 
is_active_in cortical actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular matrix IDA
Inferred from Direct Assay
more info
PubMed 
located_in macropinocytic cup IDA
Inferred from Direct Assay
more info
PubMed 
located_in phagocytic vesicle IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in pseudopodium IDA
Inferred from Direct Assay
more info
PubMed 
located_in vacuole IEA
Inferred from Electronic Annotation
more info
 

General protein information

Names
actin binding protein A
actin bundling protein
alpha actinin
alpha actinin 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007087.3 Reference assembly

    Range
    2137156..2139957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_641887.1XP_646979.1  alpha actinin [Dictyostelium discoideum AX4]

    See identical proteins and their annotated locations for XP_646979.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P05095
    Conserved Domains (5) summary
    COG5126
    Location:720858
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00014
    Location:24127
    CH; Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like ...
    cd00051
    Location:733794
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd00176
    Location:387608
    SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    pfam08726
    Location:801861
    EFhand_Ca_insen; Ca2+ insensitive EF hand
Support Center