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FDY flagrante delicto Y [ Drosophila melanogaster (fruit fly) ]

Gene ID: 8674077, updated on 29-Dec-2023

Summary

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Official Symbol
FDYprovided by FlyBase
Official Full Name
flagrante delicto Yprovided by FlyBase
Primary source
FLYBASE:FBgn0265047
Locus tag
Dmel_CG41503
See related
AllianceGenome:FB:FBgn0265047
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG41503; CR41503; Dmel\CG41503; fdy; Fdy
Summary
Predicted to enable RNA binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in testis. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1) and HABP4 (hyaluronan binding protein 4). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: Y
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) Y NC_024512.1 (3022289..3024026)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) YHet NW_001848860.1 (305269..307006)

Chromosome Y - NC_024512.1Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene pseudo

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Y chromosome as a target for acquired and amplified genetic material in evolution. Gvozdev VA, et al. Bioessays, 2005 Dec. PMID 16299764
  2. Birth of a new gene on the Y chromosome of Drosophila melanogaster. Carvalho AB, et al. Proc Natl Acad Sci U S A, 2015 Oct 6. PMID 26385968, Free PMC Article
  3. Drosophila melanogaster Y Chromosome Genes Affect Male Sensitivity to Microbial Infections. Bartolo G, et al. Insects, 2021 Jan 5. PMID 33466347, Free PMC Article
  4. Dissecting Fertility Functions of Drosophila Y Chromosome Genes with CRISPR. Hafezi Y, et al. Genetics, 2020 Apr. PMID 32098759, Free PMC Article
  5. Unique structure and positive selection promote the rapid divergence of Drosophila Y chromosomes. Chang CH, et al. Elife, 2022 Jan 6. PMID 34989337, Free PMC Article

See all (27) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

  • Annotated by Drosophila Heterochromatin Genome Project, Lawrence Berkeley National Lab, http://www.dhgp.org

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
flagrante delicto Y
Names
CG41503-PD
CG41503-PE
FDY-PD
FDY-PE
NP_001303579.2
  • sequencing error
NP_001356913.1
  • sequencing error

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_024512.1 Reference assembly

    Range
    3022289..3024026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001316650.1 → NP_001303579.2  flagrante delicto Y, isoform E, partial [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0H4CMP0, A0A0S0X2W5, D2A6L8
    Conserved Domains (2) summary
    PRK11634
    Location:308 → 368
    PRK11634; ATP-dependent RNA helicase DeaD; Provisional
    pfam04774
    Location:144 → 242
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

  2. NM_001370012.1 → NP_001356913.1  flagrante delicto Y, isoform D, partial [Drosophila melanogaster]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0H4CMP0, A0A0S0X2W5, D2A6L8
    Conserved Domains (2) summary
    PRK11634
    Location:308 → 368
    PRK11634; ATP-dependent RNA helicase DeaD; Provisional
    pfam04774
    Location:144 → 242
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
D2A6L8 D2A6L8

Gene LinkOut

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