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SNR11 [ Saccharomyces cerevisiae S288C ]

Gene ID: 9164951, updated on 7-Sep-2023

Summary

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Gene symbol
SNR11
Primary source
SGD:S000007293
Locus tag
YNCM0031W
See related
AllianceGenome:SGD:S000007293
Gene type
ncRNA
RNA name
snoRNA
Organism
Saccharomyces cerevisiae S288C (strain: S288C)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Summary
Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Located in nucleolus. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See SNR11 in Genome Data Viewer
Location:
chromosome: XIII
Exon count:
1
Sequence:
Chromosome: XIII; NC_001145.3 (652275..652532)

Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene mitochondrial 54S ribosomal protein YmL24/YmL14 Neighboring gene ribosomal 60S subunit protein L36A Neighboring gene Cmc4p Neighboring gene Icy1p

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_001145.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SSB-1 of the yeast Saccharomyces cerevisiae is a nucleolar-specific, silver-binding protein that is associated with the snR10 and snR11 small nuclear RNAs. Clark MW, et al. J Cell Biol, 1990 Nov. PMID 2121740, Free PMC Article
  2. A diverse set of nuclear RNAs transfer between nuclei of yeast heterokaryons. Olson BL, et al. Yeast, 2003 Jul 30. PMID 12868058
  3. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Lafontaine DL, et al. Genes Dev, 1998 Feb 15. PMID 9472021, Free PMC Article
  4. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article
  5. Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome. Schattner P, et al. Nucleic Acids Res, 2004. PMID 15306656, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of large subunit (LSU) rRNA at position U2416

Gene Ontology Provided by SGD

Function Evidence Code Pubs
enables rRNA pseudouridylation guide activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IPI
Inferred from Physical Interaction
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IPI
Inferred from Physical Interaction
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001145.3 Reference assembly

    Range
    652275..652532
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_132246.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

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