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LOC9272564 cytochrome P450 CYP72A219 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 9272564, updated on 21-Dec-2023

Summary

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Gene symbol
LOC9272564
Gene description
cytochrome P450 CYP72A219
Locus tag
OSNPB_010627933
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves after flowering (RPKM 30.9), leaves before flowering (RPKM 27.1) and 4 other tissues See more
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25070657..25072823)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 72A13 Neighboring gene cytochrome P450 72A15 Neighboring gene cytochrome P450 72A15 Neighboring gene cytochrome P450 72A11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome P450 72A68; cytochrome P450 CYP72A219
Names
Os01g0627933
P0006C01.41
P0688A04.19
cytochrome P450-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25070657..25072823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767020.2 → XP_015622506.1  cytochrome P450 72A68 isoform X4

    Conserved Domains (1) summary
    cl12078
    Location:39 → 308
    p450; Cytochrome P450

  2. XM_015767017.2 → XP_015622503.1  cytochrome P450 CYP72A219 isoform X2

    UniProtKB/TrEMBL
    A0A0P0V5J0
    Conserved Domains (1) summary
    cl12078
    Location:39 → 442
    p450; Cytochrome P450

  3. XM_015767016.2 → XP_015622502.1  cytochrome P450 CYP72A219 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V5J0
    Conserved Domains (1) summary
    cl12078
    Location:39 → 431
    p450; Cytochrome P450

  4. XM_015767018.2 → XP_015622504.1  cytochrome P450 CYP72A219 isoform X3

    UniProtKB/TrEMBL
    C7IXF7
    Conserved Domains (1) summary
    cl12078
    Location:39 → 380
    p450; Cytochrome P450
Nucleotide Protein
Heading Accession and Version

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