U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ClYVVgp1 polyprotein [ Clover yellow vein virus ]

Gene ID: 935905, updated on 18-Aug-2023

Summary

Go to the top of the page Help
Gene symbol
ClYVVgp1
Gene description
polyprotein
Locus tag
ClYVVgp1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Clover yellow vein virus (strain: No.30)
Lineage
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_003536.1 (191..9409)

NC_003536.1Genomic Context describing neighboring genes Neighboring gene PIPO

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003536.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. P3N-PIPO of Clover yellow vein virus exacerbates symptoms in pea infected with white clover mosaic virus and is implicated in viral synergism. Hisa Y, et al. Virology, 2014 Jan 20. PMID 24418553
  2. A cDNA clone to clover yellow vein potyvirus genome is highly infectious. Takahashi Y, et al. Virus Genes, 1997. PMID 9311568

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. P3-PIPO of Clover yellow vein virus is involved in the synergism between clover yellow vein virus and white clover mosaic virus during pea infection.
    Title: P3N-PIPO of Clover yellow vein virus exacerbates symptoms in pea infected with white clover mosaic virus and is implicated in viral synergism.
Submit: New GeneRIF Correction

General protein information

Go to the top of the page Help
Preferred Names
polyprotein
Names
P1 protein
HC-Pro protein
P3 protein
6K1 protein
CI protein
6K2 protein
NIa-VPg protein
NIa-Pro protein
NIb protein
coat protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003536.1 Reference assembly

    Range
    191..9409
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_613273.1 polyprotein [Clover yellow vein virus]

    See identical proteins and their annotated locations for NP_613273.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A077SMU2, O92645
    Conserved Domains (10) summary
    smart00487
    Location:1227 → 1383
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:1239 → 1366
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam01577
    Location:63 → 301
    Peptidase_S30; Potyvirus P1 protease
    pfam00271
    Location:1410 → 1520
    Helicase_C; Helicase conserved C-terminal domain
    pfam00767
    Location:2839 → 3071
    Poty_coat; Potyvirus coat protein
    pfam00851
    Location:326 → 759
    Peptidase_C6; Helper component proteinase
    pfam00863
    Location:2039 → 2270
    Peptidase_C4; Peptidase family C4
    pfam08440
    Location:1545 → 1818
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:774 → 1211
    Potyvirid-P3; Protein P3 of Potyviral polyprotein
    cl02808
    Location:2308 → 2767
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  2. NP_734163.1 P1 protein

    Conserved Domains (1) summary
    pfam01577
    Location:63 → 301
    Peptidase_S30; Potyvirus P1 protease

  3. NP_734164.1 HC-Pro protein

    Conserved Domains (1) summary
    pfam00851
    Location:24 → 457
    Peptidase_C6; Helper component proteinase

  4. NP_734165.1 P3 protein

    UniProtKB/TrEMBL
    K0J2A7
    Conserved Domains (1) summary
    pfam13608
    Location:15 → 333
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  5. NP_734166.1 6K1 protein

    Conserved Domains (1) summary
    pfam13608
    Location:2 → 44
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  6. NP_734167.1 CI protein

    Conserved Domains (5) summary
    smart00487
    Location:67 → 223
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:79 → 206
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:250 → 360
    Helicase_C; Helicase conserved C-terminal domain
    pfam08440
    Location:385 → 612
    Poty_PP; Potyviridae polyprotein
    pfam13608
    Location:1 → 51
    Potyvirid-P3; Protein P3 of Potyviral polyprotein

  7. NP_734168.1 6K2 protein

  8. NP_734169.1 NIa-VPg protein

  9. NP_734170.1 NIa-Pro protein

    Conserved Domains (1) summary
    pfam00863
    Location:7 → 231
    Peptidase_C4; Peptidase family C4

  10. NP_734171.1 NIb protein

    Conserved Domains (1) summary
    cl02808
    Location:26 → 485
    RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

  11. NP_734172.1 coat protein

    UniProtKB/TrEMBL
    A0A024FAW3, Q76KL8
    Conserved Domains (1) summary
    pfam00767
    Location:38 → 270
    Poty_coat; Potyvirus coat protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.