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ST7-AS2 ST7 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 93654, updated on 10-Oct-2023

Summary

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Official Symbol
ST7-AS2provided by HGNC
Official Full Name
ST7 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:16044
See related
Ensembl:ENSG00000226367 AllianceGenome:HGNC:16044
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ST7AS2; ST7OT2
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ST7-AS2 in Genome Data Viewer
Location:
7q31.2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (117072072..117145592, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (118387722..118461258, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (116712126..116785646, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene suppression of tumorigenicity 7 Neighboring gene tropomyosin 3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26540 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18569 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:116659304-116660503 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26541 Neighboring gene microRNA 6132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26542 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:116716803-116717302 Neighboring gene greater CFTR locus negative regulatory element NR4 Neighboring gene uncharacterized LOC124901732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26543 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26544 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:116794856-116795649 Neighboring gene greater CFTR locus negative regulatory element CR10 Neighboring gene greater CFTR locus negative regulatory element CR11 Neighboring gene ST7 overlapping transcript 3 Neighboring gene uncharacterized LOC105375466

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system. Vincent JB, et al. Genomics, 2002 Sep. PMID 12213198
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • ST7 antisense RNA 2 (non-protein coding)
  • ST7 overlapping transcript 2 (antisense non-coding RNA)
  • ST7 overlapping transcript 2 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002331.3 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and contains two alternate internal exons, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC002542, AF400045, DB054726
    Related
    ENST00000434993.5

  2. NR_109980.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate exon structure, resulting in a longer transcript, compared to variant 1.
    Source sequence(s)
    AC002542, AF400042, CB054673
    Related
    ENST00000456577.5

  3. NR_109981.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript.
    Source sequence(s)
    AC002542, AF400045, DB054726
    Related
    ENST00000442719.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    117072072..117145592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    118387722..118461258 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
Molecular Biology Databases