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Pcdhb10 protocadherin beta 10 [ Mus musculus (house mouse) ]

Gene ID: 93881, updated on 23-Jun-2021

Summary

Official Symbol
Pcdhb10provided by MGI
Official Full Name
protocadherin beta 10provided by MGI
Primary source
MGI:MGI:2136745
See related
Ensembl:ENSMUSG00000045657
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pcdhb; Pcdhb5; PcdhbJ; Pcdhb5D
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Genomic context

See Pcdhb10 in Genome Data Viewer
Location:
18; 18 B3
Exon count:
1
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (37544727..37547567)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (37411674..37414514)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (37571328..37574168)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 37013 Neighboring gene predicted gene, 38666 Neighboring gene predicted gene, 38667 Neighboring gene protocadherin beta 8 Neighboring gene protocadherin beta 9 Neighboring gene protocadherin beta 11 Neighboring gene predicted gene, 20162

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_053135.2NP_444365.1  protocadherin beta 10 precursor

    See identical proteins and their annotated locations for NP_444365.1

    Status: VALIDATED

    Source sequence(s)
    AY013771, BM942895, BY722394
    Consensus CDS
    CCDS29177.1
    UniProtKB/TrEMBL
    Q91VE5
    Related
    ENSMUSP00000056420.3, ENSMUST00000051126.4
    Conserved Domains (3) summary
    cd11304
    Location:247342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:31112
    Cadherin_2; Cadherin-like
    pfam16492
    Location:687769
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    37544727..37547567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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