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yihD DUF1040 domain-containing protein YihD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948348, updated on 6-Jun-2024

Summary

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Gene symbol
yihD
Gene description
DUF1040 domain-containing protein YihD
Primary source
ASAP:ABE-0012599
Locus tag
b3858
See related
ECOCYC:EG11830
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3850
Summary
YihD protein has been detected . [More information is available at EcoCyc: EG11830].
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Genomic context

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Sequence:
NC_000913.3 (4042069..4042338)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene 5S ribosomal RNA Neighboring gene molybdopterin-guanine dinucleotide biosynthesis adaptor protein Neighboring gene molybdenum cofactor guanylyltransferase Neighboring gene stress response kinase A Neighboring gene thiol:disulfide oxidoreductase DsbA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
  2. Small genes/gene-products in Escherichia coli K-12. Wasinger VC, et al. FEMS Microbiol Lett, 1998 Dec 15. PMID 9868784
  3. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Lu P, et al. Nat Biotechnol, 2007 Jan. PMID 17187058
  4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
  5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. N-terminus verified by Edman degradation on complete protein
    Title: Small genes/gene-products in Escherichia coli K-12.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
DUF1040 domain-containing protein YihD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4042069..4042338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418295.1 DUF1040 domain-containing protein YihD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418295.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A192CFV9, A0A1X3HZ34, A0A1X3IUB9, A0A1X3JA36, A0AA36L2B3, F4T682, Q1R457
    Conserved Domains (1) summary
    pfam06288
    Location:1 → 86
    DUF1040; Protein of unknown function (DUF1040)
Nucleotide Protein
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