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yjhU putative DNA-binding transcriptional regulator YjhU [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948827, updated on 6-Oct-2023

Summary

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Gene symbol
yjhU
Gene description
putative DNA-binding transcriptional regulator YjhU
Primary source
ASAP:ABE-0014079
Locus tag
b4295
See related
ECOCYC:G7909
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4284
Summary
AFMB Structural Genomics target Number 108 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12604].
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Genomic context

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Sequence:
NC_000913.3 (4519338..4520324, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YkiE Neighboring gene IS1 family repressor protein InsA Neighboring gene pseudo Neighboring gene putative transporter YjhF Neighboring gene D-xylonate dehydratase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes and Proteins Involved in qnrS1 Induction. Monárrez R, et al. Antimicrob Agents Chemother, 2018 Sep. PMID 29914953, Free PMC Article
  2. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
  3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
  4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
putative DNA-binding transcriptional regulator YjhU

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4519338..4520324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418715.2 putative DNA-binding transcriptional regulator YjhU [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418715.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7A3SWH9
    Conserved Domains (1) summary
    COG2390
    Location:12 → 325
    DeoR; DNA-binding transcriptional regulator LsrR, DeoR family [Transcription]
Nucleotide Protein
Heading Accession and Version

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