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Fam90a1a family with sequence similarity 90, member A1A [ Mus musculus (house mouse) ]

Gene ID: 97476, updated on 23-Jun-2021

Summary

Official Symbol
Fam90a1aprovided by MGI
Official Full Name
family with sequence similarity 90, member A1Aprovided by MGI
Primary source
MGI:MGI:2142877
See related
Ensembl:ENSMUSG00000079112
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C86695
Expression
Low expression observed in reference dataset See more
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Genomic context

See Fam90a1a in Genome Data Viewer
Location:
8; 8 A2
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22448730..22454319)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (21958714..21964303)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (23069186..23074775)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene defensin beta 35 Neighboring gene predicted gene, 29821 Neighboring gene defensin beta 13 Neighboring gene coiled-coil domain containing 70 Neighboring gene ATPase, Cu++ transporting, beta polypeptide

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081662.1NP_001075131.1  protein FAM90A1

    Status: VALIDATED

    Source sequence(s)
    AK135805, DV648735
    Consensus CDS
    CCDS52517.1
    UniProtKB/TrEMBL
    A2A4E2
    Related
    ENSMUSP00000106369.2, ENSMUST00000110741.2
    Conserved Domains (1) summary
    pfam15288
    Location:3776
    zf-CCHC_6; Zinc knuckle

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    22448730..22454319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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