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    4921511C20Rik RIKEN cDNA 4921511C20 gene [ Mus musculus (house mouse) ]

    Gene ID: 245598, updated on 8-Feb-2024

    Summary

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    Official Symbol
    4921511C20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4921511C20 geneprovided by MGI
    Gene description
    high density lipoprotein (HDL) binding protein pseudogene
    Primary source
    MGI:MGI:2685229
    See related
    AllianceGenome:MGI:2685229
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm383
    Summary
    Predicted to enable mRNA binding activity. Predicted to be part of polysome. Predicted to be active in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See 4921511C20Rik in Genome Data Viewer
    Location:
    X E3; X 49.81 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (126301916..126303521)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (127394293..127395898)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene ring finger protein 2 pseudogene Neighboring gene predicted gene, 22139 Neighboring gene STARR-seq mESC enhancer starr_47903 Neighboring gene STARR-seq mESC enhancer starr_47904 Neighboring gene STARR-seq mESC enhancer starr_47905 Neighboring gene STARR-seq mESC enhancer starr_47906 Neighboring gene STARR-seq mESC enhancer starr_47907 Neighboring gene STARR-seq mESC enhancer starr_47908 Neighboring gene claudin 34C4 Neighboring gene STARR-seq mESC enhancer starr_47909 Neighboring gene STARR-seq mESC enhancer starr_47910 Neighboring gene predicted gene, 25061

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • high density lipoprotein (HDL) binding protein pseudogene

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003646.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AK076563

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      126301916..126303521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_207250.1: Suppressed sequence

      Description
      NM_207250.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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