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    Gm20257 predicted gene, 20257 [ Mus musculus (house mouse) ]

    Gene ID: 100504501, updated on 27-Feb-2024

    Summary

    Official Symbol
    Gm20257provided by MGI
    Official Full Name
    predicted gene, 20257provided by MGI
    Gene description
    caspase 8 pseudogene
    Primary source
    MGI:MGI:5012442
    See related
    Ensembl:ENSMUSG00000121483 AllianceGenome:MGI:5012442
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in bladder adult (RPKM 3.3), subcutaneous fat pad adult (RPKM 3.2) and 28 other tissues See more
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    Genomic context

    See Gm20257 in Genome Data Viewer
    Location:
    1 C1.3; 1 29.15 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (58691800..58694990)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (58652641..58655831)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01017 Neighboring gene Fanconi anemia, complementation group L pseudogene Neighboring gene STARR-seq mESC enhancer starr_01018 Neighboring gene chromobox 3, pseudogene 7 Neighboring gene flagellum associated containing coiled-coil domains 1 Neighboring gene STARR-seq mESC enhancer starr_01019 Neighboring gene STARR-positive B cell enhancer mm9_chr1:58750575-58750876 Neighboring gene STARR-positive B cell enhancer ABC_E790 Neighboring gene STARR-positive B cell enhancer ABC_E5758 Neighboring gene CASP8 and FADD-like apoptosis regulator

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045007.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AK079804
      Related
      ENSMUST00000185352.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      58691800..58694990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)