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    SAMD11P1 sterile alpha motif domain containing 11 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 100421331, updated on 10-Oct-2023

    Summary

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    Official Symbol
    SAMD11P1provided by HGNC
    Official Full Name
    sterile alpha motif domain containing 11 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:44473
    See related
    Ensembl:ENSG00000262480 AllianceGenome:HGNC:44473
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    17p13.3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (2613282..2613969, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (2502471..2503158, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (2516576..2517263, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 33, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:2496154-2496882 Neighboring gene eukaryotic translation initiation factor 4A1 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8006 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8007 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8008 Neighboring gene Sharpr-MPRA regulatory region 7021 Neighboring gene platelet activating factor acetylhydrolase 1b regulatory subunit 1 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:2562337-2562838 Neighboring gene RNA, 7SL, cytoplasmic 608, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_026140.1 

      Range
      101..788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      2613282..2613969 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      2502471..2503158 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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