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    Cts8-ps cathepsin 8, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 116911, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Cts8-psprovided by MGI
    Official Full Name
    cathepsin 8, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2151708
    See related
    Ensembl:ENSMUSG00000121401 AllianceGenome:MGI:2151708
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cts2-ps
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    13 B2; 13 32.69 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (61429194..61436664, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (61281380..61288850, complement)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene cathepsin 6 Neighboring gene STARR-seq mESC enhancer starr_34747 Neighboring gene cathepsin 8 Neighboring gene predicted gene 5664 Neighboring gene cathepsin 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of a dense cluster of placenta-specific cysteine peptidase genes and related genes on mouse chromosome 13. Deussing J, et al. Genomics, 2002 Feb. PMID 11829493
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • cathepsin 2, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027871.2 RNA Sequence

      Status: INFERRED

      Source sequence(s)
      AC116797
      Related
      ENSMUST00000224763.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      61429194..61436664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_003056.1: Suppressed sequence

      Description
      NG_003056.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NG_019394.1: Suppressed sequence

      Description
      NG_019394.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

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