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    Ccdc86 coiled-coil domain containing 86 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293738, updated on 30-Sep-2021

    Summary

    Official Symbol
    Ccdc86provided by RGD
    Official Full Name
    coiled-coil domain containing 86provided by RGD
    Primary source
    RGD:1359280
    See related
    EnsemblRapid:ENSRNOG00000020925
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Adrenal (RPKM 150.6), Muscle (RPKM 102.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Ccdc86 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    108 current mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (207590946..207596527, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (226996435..227002016, complement)

    Chromosome 1 - NC_051336.1Genomic Context describing neighboring genes Neighboring gene zona pellucida glycoprotein 1 Neighboring gene prostaglandin D2 receptor 2 Neighboring gene membrane spanning 4-domains A10 Neighboring gene membrane spanning 4-domains A15

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Homology

    Clone Names

    • MGC94720

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 86
    Names
    cyclon
    cytokine-induced protein with coiled-coil domain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006974.2NP_001006975.1  coiled-coil domain-containing protein 86

      See identical proteins and their annotated locations for NP_001006975.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ501253
      UniProtKB/Swiss-Prot
      Q5XIB5
      Related
      ENSRNOP00000028405.4, ENSRNOT00000028405.7
      Conserved Domains (1) summary
      pfam03879
      Location:217303
      Cgr1; Cgr1 family

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 108 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRatBN7.2 Primary Assembly

    Genomic

    1. NC_051336.1 Reference mRatBN7.2 Primary Assembly

      Range
      207590946..207596527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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