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    Atp5b ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [ Mus musculus (house mouse) ]

    Gene ID: 11947, updated on 22-Aug-2021

    Summary

    Official Symbol
    Atp5bprovided by MGI
    Official Full Name
    ATP synthase, H+ transporting mitochondrial F1 complex, beta subunitprovided by MGI
    Primary source
    MGI:MGI:107801
    See related
    Ensembl:ENSMUSG00000025393
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Atp5f1b
    Expression
    Ubiquitous expression in heart adult (RPKM 1957.4), kidney adult (RPKM 1315.7) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Atp5b in Genome Data Viewer
    Location:
    10; 10 D3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127919176..127926257)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128083307..128090388)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (127520363..127527444)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex alpha polypeptide Neighboring gene prostaglandin E synthase 3 Neighboring gene predicted gene, 47438 Neighboring gene small nucleolar RNA, C/D box 59A Neighboring gene microRNA 677 Neighboring gene bromodomain adjacent to zinc finger domain, 2A Neighboring gene predicted gene, 51821 Neighboring gene RNA binding motif, single stranded interacting protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ADP binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ATP binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to ATP hydrolysis activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables ATP hydrolysis activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables MHC class I protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables angiostatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables calcium ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables lipoprotein particle receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    contributes_to proton-transporting ATP synthase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    contributes_to proton-transporting ATP synthase activity, rotational mechanism ISO
    Inferred from Sequence Orthology
    more info
     
    enables proton-transporting ATP synthase activity, rotational mechanism ISO
    Inferred from Sequence Orthology
    more info
     
    enables proton-transporting ATPase activity, rotational mechanism ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane raft ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial inner membrane HDA PubMed 
    located_in mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrial nucleoid ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial proton-transporting ATP synthase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of mitochondrial proton-transporting ATP synthase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) ISO
    Inferred from Sequence Orthology
    more info
     
    located_in mitochondrion HDA PubMed 
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in myelin sheath HDA PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of proton-transporting ATP synthase complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of proton-transporting ATP synthase complex, catalytic core F(1) IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of proton-transporting ATP synthase complex, catalytic core F(1) ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ATP synthase subunit beta, mitochondrial
    Names
    ATP synthase F1 subunit beta
    ATP synthase, H+ transporting mitochondrial F1 complex, alpha subunit
    mitochondrial ATP synthase, H+ transporting F1 complex beta subunit
    NP_058054.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016774.3NP_058054.2  ATP synthase subunit beta, mitochondrial precursor

      See identical proteins and their annotated locations for NP_058054.2

      Status: VALIDATED

      Source sequence(s)
      AC131120
      Consensus CDS
      CCDS24259.1
      UniProtKB/Swiss-Prot
      P56480
      Related
      ENSMUSP00000026459.6, ENSMUST00000026459.6
      Conserved Domains (1) summary
      PRK09280
      Location:58524
      PRK09280; F0F1 ATP synthase subunit beta; Validated

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127919176..127926257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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