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    Slc25a47 solute carrier family 25, member 47 [ Mus musculus (house mouse) ]

    Gene ID: 104910, updated on 23-Jun-2021

    Summary

    Official Symbol
    Slc25a47provided by MGI
    Official Full Name
    solute carrier family 25, member 47provided by MGI
    Primary source
    MGI:MGI:2144766
    See related
    Ensembl:ENSMUSG00000048856
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HDMCP; AI132487; AI876593
    Expression
    Biased expression in liver adult (RPKM 215.8), liver E18 (RPKM 48.5) and 1 other tissue See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Slc25a47 in Genome Data Viewer
    Location:
    12; 12 F1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (108815740..108822741)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (108849833..108856815)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (110089339..110095025)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29 Neighboring gene predicted gene, 53767 Neighboring gene microRNA 345 Neighboring gene predicted gene, 22079 Neighboring gene tryptophanyl-tRNA synthetase Neighboring gene WD repeat domain 25 Neighboring gene peptidyl prolyl isomerase H pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Markers

    Homology

    Clone Names

    • MGC107675

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acyl carnitine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in acyl carnitine transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in amino acid transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HDA PubMed 

    General protein information

    Preferred Names
    solute carrier family 25 member 47
    Names
    hepatocellular carcinoma down-regulated mitochondrial carrier homolog
    mitochondrial hepatocellular carcinoma-downregulated carrier protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012310.2NP_001012310.2  solute carrier family 25 member 47

      See identical proteins and their annotated locations for NP_001012310.2

      Status: VALIDATED

      Source sequence(s)
      AI173533, AK149369
      Consensus CDS
      CCDS26165.1
      UniProtKB/Swiss-Prot
      Q6IS41
      Related
      ENSMUSP00000050329.9, ENSMUST00000057026.10
      Conserved Domains (1) summary
      pfam00153
      Location:215304
      Mito_carr; Mitochondrial carrier protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      108815740..108822741
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243981.4XP_011242283.1  solute carrier family 25 member 47 isoform X1

      Conserved Domains (1) summary
      pfam00153
      Location:226307
      Mito_carr; Mitochondrial carrier protein
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