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    Jcad junctional cadherin 5 associated [ Mus musculus (house mouse) ]

    Gene ID: 240185, updated on 23-Jun-2021

    Summary

    Official Symbol
    Jcadprovided by MGI
    Official Full Name
    junctional cadherin 5 associatedprovided by MGI
    Primary source
    MGI:MGI:2685174
    See related
    Ensembl:ENSMUSG00000033960
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm328; mKIAA1462; 1110056P05Rik; 9430020K01Rik
    Expression
    Broad expression in lung adult (RPKM 23.0), cortex adult (RPKM 11.1) and 20 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Jcad in Genome Data Viewer
    Location:
    18; 18 A1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (4590775..4682869)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (4590792..4682869)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (4634927..4682867)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene protein arginine N-methyltransferase 8 pseudogene Neighboring gene predicted gene, 41658 Neighboring gene predicted gene 5047 Neighboring gene predicted gene 10556 Neighboring gene predicted gene, 34269

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1462

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in adherens junction IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in adherens junction ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cell junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cell-cell junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in ruffle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in ruffle membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    junctional protein associated with coronary artery disease

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081963.1NP_001075432.1  junctional protein associated with coronary artery disease

      See identical proteins and their annotated locations for NP_001075432.1

      Status: VALIDATED

      Source sequence(s)
      AC147227, AK220394, BU757028
      Consensus CDS
      CCDS37719.1
      UniProtKB/Swiss-Prot
      Q5DTX6
      UniProtKB/TrEMBL
      B7ZN02
      Related
      ENSMUSP00000038613.6, ENSMUST00000037029.7
      Conserved Domains (1) summary
      pfam15351
      Location:11309
      JCAD; Junctional protein associated with coronary artery disease

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      4590775..4682869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006525904.4XP_006525967.1  junctional protein associated with coronary artery disease isoform X1

      See identical proteins and their annotated locations for XP_006525967.1

      UniProtKB/Swiss-Prot
      Q5DTX6
      UniProtKB/TrEMBL
      B7ZN02
      Related
      ENSMUSP00000157313.2, ENSMUST00000234153.2
      Conserved Domains (1) summary
      pfam15351
      Location:11309
      JCAD; Junctional protein associated with coronary artery disease
    2. XM_006525903.4XP_006525966.1  junctional protein associated with coronary artery disease isoform X1

      See identical proteins and their annotated locations for XP_006525966.1

      UniProtKB/Swiss-Prot
      Q5DTX6
      UniProtKB/TrEMBL
      B7ZN02
      Conserved Domains (1) summary
      pfam15351
      Location:11309
      JCAD; Junctional protein associated with coronary artery disease
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