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    Peg3 paternally expressed 3 [ Mus musculus (house mouse) ]

    Gene ID: 18616, updated on 16-Oct-2021

    Summary

    Official Symbol
    Peg3provided by MGI
    Official Full Name
    paternally expressed 3provided by MGI
    Primary source
    MGI:MGI:104748
    See related
    Ensembl:ENSMUSG00000002265
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Pw1; End4; ASF-1; Gcap4; Zfp102; AL022617; mKIAA0287
    Expression
    Biased expression in placenta adult (RPKM 77.8), limb E14.5 (RPKM 49.2) and 12 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Peg3 in Genome Data Viewer
    Location:
    7 A1; 7 3.89 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6706891..6733443, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6703892..6730462, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (6658671..6683130, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger, imprinted 2 Neighboring gene zinc finger, imprinted 1 Neighboring gene Peg3 opposite strand Neighboring gene ubiquitin specific peptidase 29 Neighboring gene Tctex1 domain containing 2 pseudogene Neighboring gene microRNA 3099

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in autophagosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    paternally-expressed gene 3 protein
    Names
    granule cell antiserum positive 4
    paternally expressed gene 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008817.2NP_032843.2  paternally-expressed gene 3 protein

      See identical proteins and their annotated locations for NP_032843.2

      Status: VALIDATED

      Source sequence(s)
      AB003040, AK044602, CAAA01104351
      Consensus CDS
      CCDS20783.1
      UniProtKB/Swiss-Prot
      Q3URU2
      Related
      ENSMUSP00000050750.5, ENSMUST00000051209.11
      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      6706891..6733443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242211.2XP_030098071.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    2. XM_017322033.3XP_017177522.1  paternally-expressed gene 3 protein isoform X4

      Conserved Domains (3) summary
      PHA03169
      Location:718936
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:183203
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10031025
      zf-C2H2; Zinc finger, C2H2 type
    3. XM_017322030.3XP_017177519.1  paternally-expressed gene 3 protein isoform X2

      Conserved Domains (3) summary
      PHA03169
      Location:9431151
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:408428
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:12181240
      zf-C2H2; Zinc finger, C2H2 type
    4. XM_017322029.3XP_017177518.1  paternally-expressed gene 3 protein isoform X1

      Conserved Domains (3) summary
      PHA03169
      Location:9431161
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:408428
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:12281250
      zf-C2H2; Zinc finger, C2H2 type
    5. XM_036152771.1XP_036008664.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    6. XM_036152776.1XP_036008669.1  paternally-expressed gene 3 protein isoform X4

      Conserved Domains (3) summary
      PHA03169
      Location:718936
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:183203
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10031025
      zf-C2H2; Zinc finger, C2H2 type
    7. XM_036152772.1XP_036008665.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    8. XM_030242212.1XP_030098072.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    9. XM_036152774.1XP_036008667.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    10. XM_036152773.1XP_036008666.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type
    11. XM_036152775.1XP_036008668.1  paternally-expressed gene 3 protein isoform X3

      Conserved Domains (3) summary
      PHA03169
      Location:8621080
      PHA03169; hypothetical protein; Provisional
      sd00017
      Location:327347
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:11471169
      zf-C2H2; Zinc finger, C2H2 type

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001010988.1: Suppressed sequence

      Description
      NM_001010988.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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