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    Ms4a7 membrane-spanning 4-domains, subfamily A, member 7 [ Mus musculus (house mouse) ]

    Gene ID: 109225, updated on 13-Jul-2021

    Summary

    Official Symbol
    Ms4a7provided by MGI
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 7provided by MGI
    Primary source
    MGI:MGI:1918846
    See related
    Ensembl:ENSMUSG00000024672
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CFFM; CD20l; CFFMA; CD20l4; 9130422I10Rik; A430103C15Rik
    Expression
    Broad expression in bladder adult (RPKM 3.2), subcutaneous fat pad adult (RPKM 2.6) and 20 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ms4a7 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11298403..11313510, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11321039..11336146, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (11395896..11410606, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930526L06 gene Neighboring gene membrane-spanning 4-domains, subfamily A, member 5 Neighboring gene membrane-spanning 4-domains, subfamily A, member 14 Neighboring gene membrane-spanning 4-domains, subfamily A, member 4A Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 4C

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    membrane-spanning 4-domains subfamily A member 7

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025610.4NP_001020781.1  membrane-spanning 4-domains subfamily A member 7 isoform b

      See identical proteins and their annotated locations for NP_001020781.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5' exon structure, differs in the 5' UTR, and uses a downstream start codon compared to variant 3. This variant also lacks an alternate in-frame exon in the 5' coding region compared to variant 3. It encodes isoform b, which is shorter and has a distinct N-terminus compared to isoform c.
      Source sequence(s)
      AC134839, AK018686, AK046559, AK079888
      Consensus CDS
      CCDS29597.1
      UniProtKB/TrEMBL
      Q8BV59, Q9D2W6
      Related
      ENSMUSP00000054830.3, ENSMUST00000056035.9
      Conserved Domains (1) summary
      pfam04103
      Location:47185
      CD20; CD20-like family
    2. NM_001276398.1NP_001263327.1  membrane-spanning 4-domains subfamily A member 7 isoform c

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (c).
      Source sequence(s)
      AC134839, AK079888, AK149890
      Consensus CDS
      CCDS70935.1
      UniProtKB/TrEMBL
      E9Q9V5, Q8BV59, Q99N04
      Related
      ENSMUSP00000025574.5, ENSMUST00000025574.11
      Conserved Domains (1) summary
      pfam04103
      Location:80237
      CD20; CD20-like family
    3. NM_027836.6NP_082112.3  membrane-spanning 4-domains subfamily A member 7 isoform a

      See identical proteins and their annotated locations for NP_082112.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) uses an alternate 5' exon structure, differs in the 5' UTR and uses a downstream start codon compared to variant 3. It encodes isoform a which is shorter than isoform c.
      Source sequence(s)
      AC134839, AK046559, AK079888, AK151261
      Consensus CDS
      CCDS29598.1
      UniProtKB/TrEMBL
      Q3UAR5, Q8BV59, Q99N04
      Related
      ENSMUSP00000064534.5, ENSMUST00000067532.11
      Conserved Domains (1) summary
      pfam04103
      Location:47204
      CD20; CD20-like family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      11298403..11313510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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