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    Banf1 BAF nuclear assembly factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 23825, updated on 23-Jun-2021

    Summary

    Official Symbol
    Banf1provided by MGI
    Official Full Name
    BAF nuclear assembly factor 1provided by MGI
    Primary source
    MGI:MGI:1346330
    See related
    Ensembl:ENSMUSG00000024844
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Baf; Bcr; Bcrp1; L2bp1/Baf
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 59.0), liver E14 (RPKM 55.5) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Banf1 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5414661..5416904, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5364633..5366876, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5364640..5366645, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene cation channel, sperm associated 1 Neighboring gene cystatin E/M Neighboring gene eukaryotic translation initiation factor 1A domain containing Neighboring gene squamous cell carcinoma antigen recognized by T cells 1 Neighboring gene RIKEN cDNA D330050I16 gene Neighboring gene testis specific 10 interacting protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables DNA binding TAS
    Traceable Author Statement
    more info
    PubMed 
    enables LEM domain binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein N-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA integration IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in chromosome condensation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in chromosome segregation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within establishment of integrated proviral latency TAS
    Traceable Author Statement
    more info
    PubMed 
    involved_in negative regulation of viral genome replication ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in condensed chromosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    barrier-to-autointegration factor
    Names
    LAP2-binding protein 1
    barrier to autointegration factor 1
    breakpoint cluster region protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001038231.2NP_001033320.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_001033320.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK010257
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Related
      ENSMUSP00000126202.2, ENSMUST00000170010.3
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor
    2. NM_001286608.1NP_001273537.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_001273537.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) represents the longest transcript and encodes the functional protein. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK011079, BE863097, BY111854
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Related
      ENSMUSP00000158117.2, ENSMUST00000237167.2
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor
    3. NM_011793.3NP_035923.1  barrier-to-autointegration factor

      See identical proteins and their annotated locations for NP_035923.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) differs in the 5' UTR, compared to variant 3. Variants 1-3 encode the same protein.
      Source sequence(s)
      AC122861, AK011079, BE863097
      Consensus CDS
      CCDS29458.1
      UniProtKB/Swiss-Prot
      O54962
      Related
      ENSMUSP00000025762.9, ENSMUST00000025762.16
      Conserved Domains (1) summary
      pfam02961
      Location:186
      BAF; Barrier to autointegration factor

    RNA

    1. NR_104482.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) uses an alternate splice site in the 5'-terminal exon and lacks an internal exon, compared to variant 3. This variant is represented as non-coding because it lacks a significant portion of the coding region and does not encode a supported protein.
      Source sequence(s)
      AC122861, AK011079, BE863097
      Related
      ENSMUST00000237704.2

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      5414661..5416904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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