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    Chaserr CHD2 adjacent suppressive regulatory RNA [ Mus musculus (house mouse) ]

    Gene ID: 69170, updated on 23-Jun-2021

    Summary

    Official Symbol
    Chaserrprovided by MGI
    Official Full Name
    CHD2 adjacent suppressive regulatory RNAprovided by MGI
    Primary source
    MGI:MGI:1916420
    See related
    Ensembl:ENSMUSG00000101970
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    linc2025; 1810026B05Rik
    Expression
    Ubiquitous expression in CNS E14 (RPKM 5.3), thymus adult (RPKM 5.2) and 28 other tissues See more
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    Genomic context

    See Chaserr in Genome Data Viewer
    Location:
    7; 7 D1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (73189546..73208143, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (73539798..73558395, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (80700038..80703409, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930429H19 gene Neighboring gene RIKEN cDNA A730056A06 gene Neighboring gene repulsive guidance molecule family member A Neighboring gene predicted gene 44758 Neighboring gene chromodomain helicase DNA binding protein 2 Neighboring gene CRISPRi-validated cis-regulatory element for Chaserr and Chd2 Neighboring gene predicted gene, 30149 Neighboring gene predicted gene, 39036 Neighboring gene predicted gene, 26176

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037569.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC099699, AK140938, BU756652
      Related
      ENSMUST00000184587.5

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      73189546..73208143 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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