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    Dhrs13 dehydrogenase/reductase (SDR family) member 13 [ Mus musculus (house mouse) ]

    Gene ID: 70451, updated on 23-Jun-2021

    Summary

    Official Symbol
    Dhrs13provided by MGI
    Official Full Name
    dehydrogenase/reductase (SDR family) member 13provided by MGI
    Primary source
    MGI:MGI:1917701
    See related
    Ensembl:ENSMUSG00000020834
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610209N15Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 9.9), adrenal adult (RPKM 9.8) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Dhrs13 in Genome Data Viewer
    Location:
    11; 11 B5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (77923139..77928690)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (78032313..78037864)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (77845815..77851366)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53689 Neighboring gene PHD finger protein 12 Neighboring gene predicted gene, 51908 Neighboring gene dehydrogenase/reductase (SDR family) member 13, opposite strand Neighboring gene flotillin 2 Neighboring gene uncharacterized LOC118567921 Neighboring gene microRNA 144

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC141618

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables NADP-retinol dehydrogenase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in retinal metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in mitochondrial inner membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    dehydrogenase/reductase SDR family member 13
    Names
    androgen-regulated short-chain dehydrogenase/reductase 1; prostate short-chain dehydrogenase reductase 1; likely ortholog of mouse cell line MC/9.IL4 derived transcript 1; CGI-82 protein; HCV core-binding protein
    short chain dehydrogenase/reductase family 7C member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183286.2NP_899109.2  dehydrogenase/reductase SDR family member 13 precursor

      See identical proteins and their annotated locations for NP_899109.2

      Status: VALIDATED

      Source sequence(s)
      AK046465, BB637905
      Consensus CDS
      CCDS36236.1
      UniProtKB/Swiss-Prot
      Q5SS80
      Related
      ENSMUSP00000021187.6, ENSMUST00000021187.12
      Conserved Domains (2) summary
      cd05327
      Location:36304
      retinol-DH_like_SDR_c_like; retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs
      PRK06197
      Location:31312
      PRK06197; short chain dehydrogenase; Provisional

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      77923139..77928690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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