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    Ly6d lymphocyte antigen 6 complex, locus D [ Mus musculus (house mouse) ]

    Gene ID: 17068, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ly6dprovided by MGI
    Official Full Name
    lymphocyte antigen 6 complex, locus Dprovided by MGI
    Primary source
    MGI:MGI:96881
    See related
    Ensembl:ENSMUSG00000034634
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ly6; Thb; Ly-6; Ly61; Ly-61
    Expression
    Biased expression in bladder adult (RPKM 542.7), spleen adult (RPKM 533.1) and 8 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ly6d in Genome Data Viewer
    Location:
    15 D3; 15 34.27 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74633905..74635416, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74762056..74763567, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (74592486..74593997, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene secreted Ly6/Plaur domain containing 2 Neighboring gene Ly6/neurotoxin 1 Neighboring gene lymphocyte antigen 6 complex, locus G6G Neighboring gene predicted gene, 33174

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in lymphocyte differentiation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within lymphocyte differentiation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within response to stilbenoid IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in anchored component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cell surface IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lymphocyte antigen 6D
    Names
    ly-6D
    thymocyte B-cell antigen

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010742.1NP_034872.1  lymphocyte antigen 6D precursor

      See identical proteins and their annotated locations for NP_034872.1

      Status: PROVISIONAL

      Source sequence(s)
      X63782
      Consensus CDS
      CCDS27531.1
      UniProtKB/Swiss-Prot
      P35459
      Related
      ENSMUSP00000047419.7, ENSMUST00000040404.8
      Conserved Domains (1) summary
      smart00134
      Location:2199
      LU; Ly-6 antigen / uPA receptor -like domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      74633905..74635416 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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