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    Ascl3 achaete-scute family bHLH transcription factor 3 [ Mus musculus (house mouse) ]

    Gene ID: 56787, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ascl3provided by MGI
    Official Full Name
    achaete-scute family bHLH transcription factor 3provided by MGI
    Primary source
    MGI:MGI:1928820
    See related
    Ensembl:ENSMUSG00000035951
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Sg; Sgn1; bHLHa; bHLHa42
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    See Ascl3 in Genome Data Viewer
    Location:
    7 E3; 7 57.46 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (109326672..109330939, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (109727465..109731732, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (116870979..116875246, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1407 Neighboring gene A kinase (PRKA) interacting protein 1 Neighboring gene cDNA sequence BC051019 Neighboring gene predicted gene, 51493 Neighboring gene TMEM9 domain family, member B Neighboring gene RIKEN cDNA 4930431P19 gene Neighboring gene nuclear receptor interacting protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC129412, MGC129413

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of RNA polymerase II transcription regulator complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of transcription regulator complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    achaete-scute homolog 3
    Names
    ASH-3
    ICRFP703B1614Q5.4
    ICRFP703N2430Q5.4
    achaete-scute complex homolog 3
    achaete-scute complex homolog-like 3
    bHLH transcriptional regulator Sgn-1
    mASH-3
    mASH3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020051.1NP_064435.1  achaete-scute homolog 3

      See identical proteins and their annotated locations for NP_064435.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ400878
      Consensus CDS
      CCDS21737.1
      UniProtKB/Swiss-Prot
      Q9JJR7
      Related
      ENSMUSP00000037702.2, ENSMUST00000035372.3
      Conserved Domains (1) summary
      pfam00010
      Location:95145
      HLH; Helix-loop-helix DNA-binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      109326672..109330939 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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