Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Wdyhv1 WDYHV motif containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 76773, updated on 23-Jun-2021

    Summary

    Official Symbol
    Wdyhv1provided by MGI
    Official Full Name
    WDYHV motif containing 1provided by MGI
    Primary source
    MGI:MGI:1924023
    See related
    Ensembl:ENSMUSG00000022359
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ntaq1; AU014961; AW550036; 2410187C16Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 6.7), limb E14.5 (RPKM 6.6) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Wdyhv1 in Genome Data Viewer
    Location:
    15 D1; 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (58004730..58022050)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58141335..58158654)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (57972991..57990209)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene zinc fingers and homeoboxes 1 Neighboring gene ATPase family, AAA domain containing 2 Neighboring gene small nuclear ribonucleoprotein Sm D2-like Neighboring gene predicted gene, 23475 Neighboring gene predicted gene, 22488 Neighboring gene predicted gene, 36112 Neighboring gene F-box protein 32 Neighboring gene predicted gene, 36193

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in cellular protein modification process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in cellular protein modification process IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein catabolic process NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    protein N-terminal glutamine amidohydrolase
    Names
    N-terminal Gln amidase
    WDYHV motif-containing protein 1
    nt(Q)-amidase
    protein NH2-terminal glutamine deamidase
    NP_001313528.1
    NP_001313531.1
    NP_084010.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326599.1NP_001313528.1  protein N-terminal glutamine amidohydrolase isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) contains an alternate 3' terminal exon, resulting in a novel 3' coding region and stop codon, compared to variant 1. It encodes isoform 2, which contains a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AC113292, AK010831, FO710768
      Consensus CDS
      CCDS88766.1
      UniProtKB/TrEMBL
      Q9CWD7
      Related
      ENSMUSP00000154671.2, ENSMUST00000227142.2
      Conserved Domains (1) summary
      pfam09764
      Location:25171
      Nt_Gln_amidase; N-terminal glutamine amidase
    2. NM_001326602.1NP_001313531.1  protein N-terminal glutamine amidohydrolase isoform 3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) contains an alternate splice site and lacks two alternate exons in the 3' region, resulting in a frameshift compared to variant 1. It encodes isoform 3, which is shorter and has a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AI843652, AK167510, FO710768
      Consensus CDS
      CCDS88767.1
      Related
      ENSMUSP00000154254.2, ENSMUST00000226955.2
    3. NM_029734.2NP_084010.1  protein N-terminal glutamine amidohydrolase isoform 1

      See identical proteins and their annotated locations for NP_084010.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
      Source sequence(s)
      AI843652, AK150578, FO710768
      Consensus CDS
      CCDS27490.1
      UniProtKB/Swiss-Prot
      Q80WB5
      Related
      ENSMUSP00000064622.8, ENSMUST00000067563.9
      Conserved Domains (1) summary
      pfam09764
      Location:25194
      Nt_Gln_amidase; N-terminal glutamine amidase

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      58004730..58022050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001781578.2 RNA Sequence

    2. XR_003951445.2 RNA Sequence

    3. XR_001781577.1 RNA Sequence

    Support Center