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    A330009N23Rik RIKEN cDNA A330009N23 gene [ Mus musculus (house mouse) ]

    Gene ID: 380977, updated on 23-Jun-2021

    Summary

    Official Symbol
    A330009N23Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A330009N23 geneprovided by MGI
    Primary source
    MGI:MGI:2443491
    See related
    Ensembl:ENSMUSG00000097915
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in cortex adult (RPKM 4.4), frontal lobe adult (RPKM 3.9) and 23 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See A330009N23Rik in Genome Data Viewer
    Location:
    15; 15 F1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (101119072..101123067, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (101221191..101225186, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101051626..101055208, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene activin A receptor, type II-like 1 Neighboring gene activin A receptor, type 1B Neighboring gene microRNA 6962 Neighboring gene expressed sequence AU021063 Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene predicted gene, 53913 Neighboring gene nuclear receptor subfamily 4, group A, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045326.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC161812, AC163018
      Related
      ENSMUST00000180639.3
    2. NR_045327.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate 5'-most exon, compared to variant 1.
      Source sequence(s)
      AC161812, BY254676, BY777609
    3. NR_045328.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate 5'-most exon, compared to variant 1.
      Source sequence(s)
      AC161812, AC163018, AK039268

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      101119072..101123067 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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