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    Smim19 small integral membrane protein 19 [ Mus musculus (house mouse) ]

    Gene ID: 102032, updated on 23-Jun-2021

    Summary

    Official Symbol
    Smim19provided by MGI
    Official Full Name
    small integral membrane protein 19provided by MGI
    Primary source
    MGI:MGI:2142501
    See related
    Ensembl:ENSMUSG00000031534
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI3168; EST-c3; EST-c39; AI316807; BG694986
    Expression
    Ubiquitous expression in heart adult (RPKM 12.0), cerebellum adult (RPKM 11.2) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Smim19 in Genome Data Viewer
    Location:
    8; 8 A2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (22952630..22966895, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (22462614..22476879, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (23573086..23587351, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S31 Neighboring gene predicted gene, 39140 Neighboring gene solute carrier family 20, member 2 Neighboring gene voltage-dependent anion channel 3 Neighboring gene predicted gene, 30086

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 19
    Names
    UPF0697 protein C8orf40 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012667.2NP_001012685.2  small integral membrane protein 19 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      BB618223, BC048089
      Consensus CDS
      CCDS52521.1
      UniProtKB/Swiss-Prot
      Q80ZU4
      UniProtKB/TrEMBL
      E9PUT6
      Related
      ENSMUSP00000131855.2, ENSMUST00000163774.3
      Conserved Domains (1) summary
      pfam15117
      Location:15112
      UPF0697; uncharacterized protein family UPF0697
    2. NM_001146117.1NP_001139589.1  small integral membrane protein 19 isoform 2

      See identical proteins and their annotated locations for NP_001139589.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream translational start codon, compared to variant 1. The resulting isoform (2) is shorter at the N-terminus, compared to isoform 1.
      Source sequence(s)
      AK140957, BB618223, BC048089, BQ922100
      Consensus CDS
      CCDS52520.1
      UniProtKB/Swiss-Prot
      Q80ZU4
      Related
      ENSMUSP00000033935.9, ENSMUST00000033935.16
      Conserved Domains (1) summary
      pfam15117
      Location:10107
      UPF0697; Uncharacterized protein family UPF0697

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      22952630..22966895 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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