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    Zfp354c zinc finger protein 354C [ Mus musculus (house mouse) ]

    Gene ID: 30944, updated on 23-Jun-2021

    Summary

    Official Symbol
    Zfp354cprovided by MGI
    Official Full Name
    zinc finger protein 354Cprovided by MGI
    Primary source
    MGI:MGI:1353621
    See related
    Ensembl:ENSMUSG00000044807
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AJ1; Kid; AJ18; Kid3; Tcf17l2; Znf354c; AW743325; mKIAA4218; 5330421P20Rik
    Expression
    Biased expression in CNS E18 (RPKM 9.9), limb E14.5 (RPKM 9.5) and 11 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Zfp354c in Genome Data Viewer
    Location:
    11 B1.3; 11 30.93 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (50701912..50718558, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (50811085..50827731, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (50624587..50641233, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2 Neighboring gene predicted gene 12199 Neighboring gene predicted gene, 51860 Neighboring gene zinc finger protein 879 Neighboring gene glutamate receptor, metabotropic 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA4218

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger protein 354C
    Names
    kidney, ischemia, and developmentally-regulated protein 3
    transcription factor 17-like 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013922.4NP_038950.3  zinc finger protein 354C

      See identical proteins and their annotated locations for NP_038950.3

      Status: VALIDATED

      Source sequence(s)
      AL627215, BC079908
      Consensus CDS
      CCDS24637.1
      UniProtKB/Swiss-Prot
      Q571J5
      Related
      ENSMUSP00000104763.3, ENSMUST00000109135.9
      Conserved Domains (5) summary
      smart00349
      Location:1474
      KRAB; krueppel associated box
      COG5048
      Location:204543
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:248268
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:1453
      KRAB; KRAB box
      pfam13465
      Location:456481
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      50701912..50718558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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