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    Igkv5-39 immunoglobulin kappa variable 5-39 [ Mus musculus (house mouse) ]

    Gene ID: 620017, updated on 23-Jun-2021

    Summary

    Official Symbol
    Igkv5-39provided by MGI
    Official Full Name
    immunoglobulin kappa variable 5-39provided by MGI
    Primary source
    MGI:MGI:2686255
    See related
    Ensembl:ENSMUSG00000076569 IMGT/GENE-DB:IGKV5-39
    Gene type
    other
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    23-39; Gm1409
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    Genomic context

    See Igkv5-39 in Genome Data Viewer
    Location:
    6; 6 C1
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (69877408..69877961, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (69900424..69900977, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (69850418..69850971, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa chain complex Neighboring gene immunoglobulin kappa chain variable 5-40-1 Neighboring gene immunoglobulin kappa chain variable 12-40 Neighboring gene immunoglobulin kappa chain variable 12-38 Neighboring gene immunoglobulin kappa variable 5-37

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Other Names

    • Ig kappa chain V-V region L7
    • anti-HIV-1 reverse transcriptase single-chain variable fragment
    • immunoglobulin kappa chain variable 5-39

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in immunoglobulin production IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_005612.1 

      Range
      2345444..2345997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      69877408..69877961 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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