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    Bbip1 BBSome interacting protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 100503572, updated on 16-Oct-2021

    Summary

    Official Symbol
    Bbip1provided by MGI
    Official Full Name
    BBSome interacting protein 1provided by MGI
    Primary source
    MGI:MGI:1913610
    See related
    Ensembl:ENSMUSG00000084957
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ncrna00081; 2310002J21Rik; 2610002B11Rik; 4930560M04Rik
    Annotation information
    Note: This gene, previously thought to be non-coding and described as Ncrna00081, is represented as protein coding based on evaluation of the transcript data and evidence of protein detection presented in PMID: 19081074. [23 Dec 2011]
    Expression
    Broad expression in CNS E18 (RPKM 14.1), CNS E14 (RPKM 11.2) and 20 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Bbip1 in Genome Data Viewer
    Location:
    19; 19 D2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (53918087..53933058, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (53929656..53944627, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (54001731..54019117, complement)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 20 Neighboring gene predicted gene 16299 Neighboring gene predicted gene, 30990 Neighboring gene programmed cell death 4 Neighboring gene Shoc2, leucine rich repeat scaffold protein Neighboring gene adrenergic receptor, alpha 2a Neighboring gene predicted gene, 41865

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within eating behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in receptor localization to non-motile cilium IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within receptor localization to non-motile cilium IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of BBSome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of BBSome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    BBSome-interacting protein 1
    Names
    BBSome-interacting protein of 10 kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195338.1NP_001182267.1  BBSome-interacting protein 1

      See identical proteins and their annotated locations for NP_001182267.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC117612, BC062276
      Consensus CDS
      CCDS57147.1
      UniProtKB/TrEMBL
      J3QMK2
      Related
      ENSMUSP00000158142.2, ENSMUST00000236370.2
      Conserved Domains (1) summary
      pfam14777
      Location:1064
      BBIP10; Cilia BBSome complex subunit 10
    2. NM_001195348.1NP_001182277.1  BBSome-interacting protein 1

      See identical proteins and their annotated locations for NP_001182277.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC117612, AK010048
      Consensus CDS
      CCDS57147.1
      UniProtKB/TrEMBL
      J3QMK2
      Related
      ENSMUSP00000136324.2, ENSMUST00000135402.4
      Conserved Domains (1) summary
      pfam14777
      Location:1064
      BBIP10; Cilia BBSome complex subunit 10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      53918087..53933058 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526547.3XP_006526610.1  BBSome-interacting protein 1 isoform X1

      Conserved Domains (1) summary
      pfam14777
      Location:3892
      BBIP10; Cilia BBSome complex subunit 10
    2. XM_006526550.3XP_006526613.1  BBSome-interacting protein 1 isoform X3

      See identical proteins and their annotated locations for XP_006526613.1

      UniProtKB/TrEMBL
      J3QMK2
      Conserved Domains (1) summary
      pfam14777
      Location:1064
      BBIP10; Cilia BBSome complex subunit 10
    3. XM_036161364.1XP_036017257.1  BBSome-interacting protein 1 isoform X2

      Conserved Domains (1) summary
      pfam14777
      Location:2175
      BBIP10; Cilia BBSome complex subunit 10
    4. XM_030250674.1XP_030106534.1  BBSome-interacting protein 1 isoform X3

      Conserved Domains (1) summary
      pfam14777
      Location:1064
      BBIP10; Cilia BBSome complex subunit 10
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