Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gm5134 predicted gene 5134 [ Mus musculus (house mouse) ]

    Gene ID: 333669, updated on 23-Jun-2021

    Summary

    Official Symbol
    Gm5134provided by MGI
    Official Full Name
    predicted gene 5134provided by MGI
    Primary source
    MGI:MGI:3646667
    See related
    Ensembl:ENSMUSG00000033255
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG333669
    Expression
    Biased expression in testis adult (RPKM 6.9), thymus adult (RPKM 1.2) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Gm5134 in Genome Data Viewer
    Location:
    10 C1; 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (75790330..75845425)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (75954496..76009591)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (75417259..75472336)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 10 Neighboring gene predicted gene 867 Neighboring gene 60S ribosomal protein L27 pseudogene Neighboring gene pre-B lymphocyte gene 3 Neighboring gene predicted gene, 40698 Neighboring gene microRNA 6409 Neighboring gene zinc finger protein 280B Neighboring gene solute carrier family 5 (neutral amino acid transporters, system A), member 4b Neighboring gene predicted gene 16222

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Targeted (1) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables glucose:sodium symporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in sodium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in integral component of membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    solute carrier family 5 (sodium/glucose cotransporter)-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198635.3NP_941037.2  solute carrier family 5 (sodium/glucose cotransporter)-like

      Status: VALIDATED

      Source sequence(s)
      AK041995, AK133270, BX523577
      Consensus CDS
      CCDS35940.2
      UniProtKB/TrEMBL
      E9QAB5, Q3V0B7, Q8BIM1
      Related
      ENSMUSP00000097172.4, ENSMUST00000099577.4
      Conserved Domains (1) summary
      cl00456
      Location:26671
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      75790330..75845425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006513791.4XP_006513854.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X1

      Conserved Domains (1) summary
      cl00456
      Location:26695
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    2. XM_036155860.1XP_036011753.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X4

      Conserved Domains (1) summary
      cl00456
      Location:26554
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    3. XM_036155858.1XP_036011751.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X2

      Conserved Domains (1) summary
      cl00456
      Location:26660
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    4. XM_036155859.1XP_036011752.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:44636
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    5. XM_036155861.1XP_036011754.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X5

      Conserved Domains (1) summary
      cl00456
      Location:26553
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    6. XM_036155862.1XP_036011755.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X6

      Conserved Domains (1) summary
      cl00456
      Location:26481
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    7. XM_011243495.4XP_011241797.1  solute carrier family 5 (sodium/glucose cotransporter)-like isoform X7

      Conserved Domains (1) summary
      cl00456
      Location:26426
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RNA

    1. XR_004936205.1 RNA Sequence

    2. XR_871715.3 RNA Sequence

    3. XR_380409.4 RNA Sequence

    Support Center