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    C1qc complement component 1, q subcomponent, C chain [ Mus musculus (house mouse) ]

    Gene ID: 12262, updated on 23-Jun-2021

    Summary

    Official Symbol
    C1qcprovided by MGI
    Official Full Name
    complement component 1, q subcomponent, C chainprovided by MGI
    Primary source
    MGI:MGI:88225
    See related
    Ensembl:ENSMUSG00000036896
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Adib; C1qg; Ciqc; AI385742
    Expression
    Broad expression in spleen adult (RPKM 175.9), mammary gland adult (RPKM 135.8) and 22 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C1qc in Genome Data Viewer
    Location:
    4 D3; 4 69.05 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (136617112..136620242, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (136889801..136892936, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (136445717..136448829, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Eph receptor B2 Neighboring gene predicted gene, 31536 Neighboring gene complement component 1, q subcomponent, beta polypeptide Neighboring gene complement component 1, q subcomponent, alpha polypeptide Neighboring gene Eph receptor A8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space HDA PubMed 
    located_in postsynapse IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    located_in synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in synapse IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    located_in synapse ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    complement C1q subcomponent subunit C
    Names
    adiponectin b
    complement component 1, q subcomponent, c polypeptide
    complement component 1, q subcomponent, gamma polypeptide

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_007574.2NP_031600.2  complement C1q subcomponent subunit C precursor

      See identical proteins and their annotated locations for NP_031600.2

      Status: VALIDATED

      Source sequence(s)
      AI385742, BB636871, CK332232
      Consensus CDS
      CCDS18811.1
      UniProtKB/Swiss-Prot
      Q02105
      Related
      ENSMUSP00000036747.6, ENSMUST00000046332.6
      Conserved Domains (2) summary
      smart00110
      Location:114246
      C1Q; Complement component C1q domain
      pfam01391
      Location:4492
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      136617112..136620242 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319927.3XP_017175416.1  complement C1q subcomponent subunit C isoform X1

      UniProtKB/Swiss-Prot
      Q02105
      Conserved Domains (2) summary
      smart00110
      Location:114246
      C1Q; Complement component C1q domain
      pfam01391
      Location:4492
      Collagen; Collagen triple helix repeat (20 copies)
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