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    A530064D06Rik RIKEN cDNA A530064D06 gene [ Mus musculus (house mouse) ]

    Gene ID: 328830, updated on 23-Jun-2021

    Summary

    Official Symbol
    A530064D06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A530064D06 geneprovided by MGI
    Primary source
    MGI:MGI:2443476
    See related
    Ensembl:ENSMUSG00000043939
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Trem4; pdctrem
    Expression
    Broad expression in liver E18 (RPKM 1.3), spleen adult (RPKM 1.0) and 15 other tissues See more
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    Genomic context

    See A530064D06Rik in Genome Data Viewer
    Location:
    17; 17 C
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (48459064..48474425, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (48151896..48167257, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (48288846..48304207, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A730006G06 gene Neighboring gene RIKEN cDNA 1700067P10 gene Neighboring gene RIKEN cDNA 9830107B12 gene Neighboring gene predicted gene, 52308 Neighboring gene triggering receptor expressed on myeloid cells 1 Neighboring gene Ewing sarcoma breakpoint region 1 pseudogene Neighboring gene predicted gene, 52307 Neighboring gene triggering receptor expressed on myeloid cells 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    triggering receptor expressed in myeloid cells 4
    Names
    plasmacytoid dendritic cell-specific receptor
    triggering receptor expressed on myeloid cells 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113556.1NP_001107028.1  triggering receptor expressed in myeloid cells 4 isoform b precursor

      See identical proteins and their annotated locations for NP_001107028.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal coding exon which results in a frameshift, compared to variant 1. The resulting isoform (b) is shorter and has a distinct C-terminus, compared to isoform a.
      Source sequence(s)
      AK080114, AK171433, BY194994
      Consensus CDS
      CCDS50138.1
      UniProtKB/TrEMBL
      Q8BNV8, Q8C239
      Related
      ENSMUSP00000027764.9, ENSMUST00000027764.10
      Conserved Domains (2) summary
      cd05716
      Location:28105
      Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
      smart00410
      Location:26121
      IG_like; Immunoglobulin like
    2. NM_178796.6NP_848911.2  triggering receptor expressed in myeloid cells 4 isoform a precursor

      See identical proteins and their annotated locations for NP_848911.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (a).
      Source sequence(s)
      AK080114, AK171433, BY194994
      Consensus CDS
      CCDS28859.1
      UniProtKB/TrEMBL
      Q8BNV8, Q8C239
      Related
      ENSMUSP00000055935.7, ENSMUST00000053612.14
      Conserved Domains (2) summary
      cd05716
      Location:28105
      Ig_pIgR; Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)
      smart00410
      Location:26111
      IG_like; Immunoglobulin like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      48459064..48474425 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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