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    Foxp4 forkhead box P4 [ Mus musculus (house mouse) ]

    Gene ID: 74123, updated on 23-Jun-2021

    Summary

    Official Symbol
    Foxp4provided by MGI
    Official Full Name
    forkhead box P4provided by MGI
    Primary source
    MGI:MGI:1921373
    See related
    Ensembl:ENSMUSG00000023991
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mFKHLA; 1200010K03Rik; 2310007G05Rik
    Expression
    Ubiquitous expression in stomach adult (RPKM 50.9), colon adult (RPKM 45.3) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Foxp4 in Genome Data Viewer
    Location:
    17; 17 C
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (48178058..48235557, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (47867133..47924632, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (48004082..48061581, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 25201 Neighboring gene nuclear encoded rRNA 5S 28 Neighboring gene macrophage migration inhibitory factor, pseudogene 8 Neighboring gene predicted gene, 29938

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    forkhead box protein P4
    Names
    fork head-related protein like A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110824.1NP_001104294.1  forkhead box protein P4 isoform 1

      See identical proteins and their annotated locations for NP_001104294.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (1).
      Source sequence(s)
      BC052407, BC057110
      Consensus CDS
      CCDS50137.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      UniProtKB/TrEMBL
      A0A0R4J161
      Related
      ENSMUSP00000094916.3, ENSMUST00000097311.9
      Conserved Domains (3) summary
      smart00339
      Location:472544
      FH; FORKHEAD
      COG5025
      Location:370565
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:309376
      FOXP-CC; FOXP coiled-coil domain
    2. NM_001110825.1NP_001104295.1  forkhead box protein P4 isoform 2

      See identical proteins and their annotated locations for NP_001104295.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate splice site in the central coding region, compared to variant 1. The resulting isoform (2) lacks an internal segment, compared to isoform 1.
      Source sequence(s)
      AB052766, BC052407, BC057110
      Consensus CDS
      CCDS50136.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      UniProtKB/TrEMBL
      A0A0R4J1I5
      Related
      ENSMUSP00000108887.2, ENSMUST00000113262.2
      Conserved Domains (2) summary
      pfam00250
      Location:460539
      Forkhead; Forkhead domain
      pfam16159
      Location:309376
      FOXP-CC; FOXP coiled-coil domain
    3. NM_028767.2NP_083043.2  forkhead box protein P4 isoform 3

      See identical proteins and their annotated locations for NP_083043.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has two alternate splice sites in the coding region, compared to variant 1. The resulting isoform (3) lacks an internal aa and an internal segment, compared to variant 1.
      Source sequence(s)
      BC052407, BC057110
      Consensus CDS
      CCDS50135.1
      UniProtKB/Swiss-Prot
      Q9DBY0
      Related
      ENSMUSP00000108890.2, ENSMUST00000113265.8
      Conserved Domains (2) summary
      pfam00250
      Location:459538
      Forkhead; Forkhead domain
      pfam16159
      Location:308375
      FOXP-CC; FOXP coiled-coil domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      48178058..48235557 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250108.1XP_030105968.1  forkhead box protein P4 isoform X4

      Conserved Domains (3) summary
      smart00339
      Location:471543
      FH; FORKHEAD
      COG5025
      Location:369564
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:308375
      FOXP-CC; FOXP coiled-coil domain
    2. XM_017317686.2XP_017173175.1  forkhead box protein P4 isoform X1

      Conserved Domains (3) summary
      smart00339
      Location:479551
      FH; FORKHEAD
      COG5025
      Location:375572
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:309376
      FOXP-CC; FOXP coiled-coil domain
    3. XM_017317688.2XP_017173177.1  forkhead box protein P4 isoform X2

      Conserved Domains (3) summary
      smart00339
      Location:478550
      FH; FORKHEAD
      COG5025
      Location:374571
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:308375
      FOXP-CC; FOXP coiled-coil domain
    4. XM_030250107.1XP_030105967.1  forkhead box protein P4 isoform X3

      Conserved Domains (3) summary
      smart00339
      Location:472544
      FH; FORKHEAD
      COG5025
      Location:370565
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:309376
      FOXP-CC; FOXP coiled-coil domain
    5. XM_017317687.3XP_017173176.1  forkhead box protein P4 isoform X1

      Conserved Domains (3) summary
      smart00339
      Location:479551
      FH; FORKHEAD
      COG5025
      Location:375572
      COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
      pfam16159
      Location:309376
      FOXP-CC; FOXP coiled-coil domain
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